| SNPs Id | Position | Function |
| Scaffold_346 | 58123 | Probable LRR receptor-like serine/threonine-protein kinase At1g53440 (EC 2.7.11.1) |
| Scaffold_347 | 69273 | Unannotated |
| Scaffold_356 | 73395 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_358 | 29967 | Unannotated |
| Scaffold_361 | 45 | NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase, subunit 2 A) (NADH-plastoquinone oxidoreductase subunit 2 A) |
| Scaffold_374 | 69186 | Unannotated |
| Scaffold_375 | 64586 | Unannotated |
| Scaffold_378 | 15363 | Unannotated |
| Scaffold_378 | 15730 | Unannotated |
| Scaffold_378 | 15751 | Unannotated |
| Scaffold_378 | 15818 | Unannotated |
| Scaffold_381 | 45171 | Unannotated |
| Scaffold_389 | 9618 | Unannotated |
| Scaffold_390 | 73241 | Unannotated |
| Scaffold_392 | 28141 | Unannotated |
| Scaffold_395 | 43858 | Unannotated |
| Scaffold_400 | 9433 | Metacaspase-5 (AtMC5) (EC 3.4.22.-) (Metacaspase 2b) (AtMCP2b) (Metacaspase-6) |
| Scaffold_400 | 10049 | Unannotated |
| Scaffold_403 | 47442 | Unannotated |
| Scaffold_412 | 43271 | ABC transporter G family member 36 (OsABCG36) (Pleiotropic drug resistance protein 9) (OsPDR9) |