| SNPs Id | Position | Function |
| Scaffold_869 | 5337 | Unannotated |
| Scaffold_875 | 27837 | Unannotated |
| Scaffold_875 | 27901 | Unannotated |
| Scaffold_877 | 9965 | Unannotated |
| Scaffold_897 | 35151 | Unannotated |
| Scaffold_897 | 43433 | Unannotated |
| Scaffold_897 | 43435 | Unannotated |
| Scaffold_901 | 56878 | Pyruvate kinase 1, cytosolic (OsPK1) (EC 2.7.1.40) |
| Scaffold_902 | 1918 | Unannotated |
| Scaffold_914 | 20876 | Fasciclin-like arabinogalactan protein 2 |
| Scaffold_929 | 36258 | Unannotated |
| Scaffold_942 | 52814 | Unannotated |
| Scaffold_942 | 56604 | Unannotated |
| Scaffold_948 | 39372 | Unannotated |
| Scaffold_957 | 33965 | Unannotated |
| Scaffold_959 | 4259 | Unannotated |
| Scaffold_961 | 20742 | Mitotic spindle checkpoint protein MAD1 (Mitotic arrest deficient protein 1) |
| Scaffold_967 | 33709 | Unannotated |
| Scaffold_981 | 50485 | Unannotated |
| Scaffold_992 | 27109 | Unannotated |