| SNPs Id | Position | Function |
| Scaffold_1118 | 19988 | Unannotated |
| Scaffold_1123 | 30833 | Unannotated |
| Scaffold_1126 | 32514 | Unannotated |
| Scaffold_1136 | 36245 | Unannotated |
| Scaffold_1151 | 3664 | Unannotated |
| Scaffold_1151 | 3677 | Unannotated |
| Scaffold_1153 | 51298 | Unannotated |
| Scaffold_1153 | 52973 | Unannotated |
| Scaffold_1168 | 46238 | MLP-like protein 43 |
| Scaffold_1198 | 3994 | Unannotated |
| Scaffold_1202 | 54097 | Unannotated |
| Scaffold_1229 | 52578 | Unannotated |
| Scaffold_1234 | 8953 | Pentatricopeptide repeat-containing protein At2g18940, chloroplastic |
| Scaffold_1239 | 15905 | Unannotated |
| Scaffold_1239 | 16128 | Unannotated |
| Scaffold_1264 | 35567 | Unannotated |
| Scaffold_1293 | 49483 | Unannotated |
| Scaffold_1293 | 49521 | Unannotated |
| Scaffold_1301 | 32785 | Unannotated |
| Scaffold_1302 | 3196 | Unannotated |