| SNP Id | Position | Function |
| Scaffold_690 | 26007 | Ferredoxin--NADP reductase, leaf isozyme 2, chloroplastic (EC 1.18.1.2) (Leaf FNR 2) (FNR-2) (Os-LFNR2) |
| Scaffold_690 | 62625 | Unannotated |
| Scaffold_691 | 26659 | Aluminum-activated malate transporter 9 (AtALMT9) |
| Scaffold_693 | 25778 | Branched-chain amino acid aminotransferase 2, chloroplastic (HlBCAT2) (EC 2.6.1.42) |
| Scaffold_693 | 25779 | Branched-chain amino acid aminotransferase 2, chloroplastic (HlBCAT2) (EC 2.6.1.42) |
| Scaffold_694 | 2343 | Unannotated |
| Scaffold_716 | 22693 | Unannotated |
| Scaffold_717 | 7038 | Spermidine synthase (SPDSY) (EC 2.5.1.16) (Putrescine aminopropyltransferase) |
| Scaffold_724 | 3615 | Unannotated |
| Scaffold_726 | 62567 | Unannotated |
| Scaffold_728 | 25485 | Unannotated |
| Scaffold_730 | 60811 | Unannotated |
| Scaffold_733 | 3629 | Unannotated |
| Scaffold_733 | 54002 | Unannotated |
| Scaffold_733 | 55697 | Unannotated |
| Scaffold_733 | 55698 | Unannotated |
| Scaffold_735 | 25633 | Unannotated |
| Scaffold_738 | 4137 | Unannotated |
| Scaffold_739 | 65433 | Unannotated |
| Scaffold_741 | 42535 | Unannotated |