| SNP Id | Position | Function |
| Scaffold_12 | 1223068 | Unannotated |
| Scaffold_12 | 1411240 | Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic (1-deoxyxylulose-5-phosphate synthase) (DXP synthase) (DXPS) (EC 2.2.1.7) (CapTKT2) |
| Scaffold_12 | 1412628 | Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic (1-deoxyxylulose-5-phosphate synthase) (DXP synthase) (DXPS) (EC 2.2.1.7) (CapTKT2) |
| Scaffold_12 | 2143913 | Unannotated |
| Scaffold_12 | 2628401 | Unannotated |
| Scaffold_12 | 2630037 | Unannotated |
| Scaffold_12 | 3292311 | Unannotated |
| Scaffold_12 | 3521777 | Unannotated |
| Scaffold_12 | 3602416 | Unannotated |
| Scaffold_12 | 3602417 | Unannotated |
| Scaffold_12 | 3602418 | Unannotated |
| Scaffold_12 | 3606081 | Unannotated |
| Scaffold_12 | 3743327 | Unannotated |
| Scaffold_12 | 3883632 | Unannotated |
| Scaffold_12 | 4014535 | Unannotated |
| Scaffold_13 | 55932 | Unannotated |
| Scaffold_13 | 102294 | Unannotated |
| Scaffold_13 | 176182 | Unannotated |
| Scaffold_13 | 301984 | Unannotated |
| Scaffold_13 | 302268 | Unannotated |