| SNP Id | Position | Function |
| Scaffold_1285 | 23751 | Unannotated |
| Scaffold_1297 | 23741 | Probable aquaporin PIP2-2 (OsPIP2;2) (Plasma membrane intrinsic protein 2-2) |
| Scaffold_1300 | 20060 | Unannotated |
| Scaffold_1302 | 2749 | Unannotated |
| Scaffold_1314 | 35189 | Unannotated |
| Scaffold_1328 | 28663 | Unannotated |
| Scaffold_1353 | 19477 | Unannotated |
| Scaffold_1353 | 19478 | Unannotated |
| Scaffold_1354 | 33487 | Unannotated |
| Scaffold_1360 | 34773 | Unannotated |
| Scaffold_1371 | 50595 | Unannotated |
| Scaffold_1388 | 45913 | Unannotated |
| Scaffold_1396 | 28797 | Unannotated |
| Scaffold_1397 | 6282 | Unannotated |
| Scaffold_1399 | 47783 | Unannotated |
| Scaffold_1412 | 1409 | Unannotated |
| Scaffold_1413 | 35901 | Unannotated |
| Scaffold_1415 | 33093 | Unannotated |
| Scaffold_1418 | 17078 | UDP-glucose flavonoid 3-O-glucosyltransferase 6 (EC 2.4.1.91) (Flavonol 3-O-glucosyltransferase 6) (FaGT6) |
| Scaffold_1420 | 676 | Unannotated |