| SNP Id | Position | Function |
| Scaffold_2436 | 80614 | Unannotated |
| Scaffold_2442 | 107083 | Unannotated |
| Scaffold_2442 | 107085 | Unannotated |
| Scaffold_2445 | 9947 | Unannotated |
| Scaffold_2445 | 10064 | Unannotated |
| Scaffold_2445 | 10191 | Unannotated |
| Scaffold_2446 | 23225 | Cationic amino acid transporter 2, vacuolar |
| Scaffold_2446 | 56686 | Unannotated |
| Scaffold_2446 | 57043 | Unannotated |
| Scaffold_2449 | 95329 | Phosphatase IMPL1, chloroplastic (EC 3.1.3.25) (Protein MYO-INOSITOL MONOPHOSPHATASE-LIKE 1) |
| Scaffold_2451 | 19453 | Unannotated |
| Scaffold_2451 | 19777 | Unannotated |
| Scaffold_2451 | 20155 | Unannotated |
| Scaffold_2451 | 20320 | Unannotated |
| Scaffold_2451 | 20721 | Unannotated |
| Scaffold_2451 | 20810 | Unannotated |
| Scaffold_2451 | 20811 | Unannotated |
| Scaffold_2451 | 20906 | Unannotated |
| Scaffold_2452 | 54231 | Unannotated |
| Scaffold_2453 | 1828 | PAP-specific phosphatase HAL2-like (3'(2'),5'-bisphosphate nucleotidase) (EC 3.1.3.7) (3'(2'),5-bisphosphonucleoside 3'(2')-phosphohydrolase) (DPNPase) (Halotolerance protein) |