| SNP Id | Position | Function |
| Scaffold_2615 | 63859 | Unannotated |
| Scaffold_2618 | 18749 | WRKY transcription factor 68 (WRKY DNA-binding protein 68) |
| Scaffold_2632 | 44474 | Transmembrane 9 superfamily member 10 (Endomembrane protein 3) (Transmembrane nine protein 10) (AtTMN10) |
| Scaffold_2633 | 40788 | Unannotated |
| Scaffold_2637 | 607 | Unannotated |
| Scaffold_2637 | 693 | Unannotated |
| Scaffold_2637 | 7456 | Unannotated |
| Scaffold_2637 | 7458 | Unannotated |
| Scaffold_2637 | 7581 | Unannotated |
| Scaffold_2637 | 7582 | Unannotated |
| Scaffold_2637 | 31719 | Unannotated |
| Scaffold_2637 | 31739 | Unannotated |
| Scaffold_2637 | 60494 | Cellulose synthase-like protein H1 (EC 2.4.1.-) (OsCslH1) |
| Scaffold_2637 | 60497 | Cellulose synthase-like protein H1 (EC 2.4.1.-) (OsCslH1) |
| Scaffold_2647 | 1468 | Unannotated |
| Scaffold_2647 | 1504 | Unannotated |
| Scaffold_2648 | 7687 | Unannotated |
| Scaffold_2648 | 65614 | Chavicol O-methyltransferase (EC 2.1.1.146) ((Iso)eugenol O-methyltransferase CVOMT1) (S-adenosysl-L-methionine:(Iso)eugenol O-methyltransferase CVOMT1) |
| Scaffold_2648 | 65616 | Chavicol O-methyltransferase (EC 2.1.1.146) ((Iso)eugenol O-methyltransferase CVOMT1) (S-adenosysl-L-methionine:(Iso)eugenol O-methyltransferase CVOMT1) |
| Scaffold_2648 | 66385 | Desmethylxanthohumol 6'-O-methyltransferase (EC 2.1.1.338) (O-methyltransferase 1) (HlOMT1) |