| SNP Id | Position | Function |
| Scaffold_2659 | 59456 | Unannotated |
| Scaffold_2660 | 10330 | Unannotated |
| Scaffold_2660 | 10332 | Unannotated |
| Scaffold_2662 | 29614 | Vacuolar-sorting protein BRO1 (BRO domain-containing protein 1) (AtBRO1) |
| Scaffold_2664 | 59514 | Unannotated |
| Scaffold_2664 | 59534 | Unannotated |
| Scaffold_2668 | 54788 | Unannotated |
| Scaffold_2669 | 2079 | Chaperone protein dnaJ A6, chloroplastic (atDjA6) (Chaperone protein dnaJ A26) (AtDjA26) |
| Scaffold_2669 | 39346 | Unannotated |
| Scaffold_2669 | 40488 | Unannotated |
| Scaffold_2670 | 76138 | Adenylyl-sulfate kinase 1, chloroplastic (EC 2.7.1.25) (ATP adenosine-5'-phosphosulfate 3'-phosphotransferase 1) (Adenosine-5'-phosphosulfate kinase 1) (APS kinase 1) |
| Scaffold_2676 | 61820 | Unannotated |
| Scaffold_2676 | 61821 | Unannotated |
| Scaffold_2677 | 4670 | Unannotated |
| Scaffold_2677 | 6971 | Unannotated |
| Scaffold_2677 | 19046 | Unannotated |
| Scaffold_2677 | 20251 | Unannotated |
| Scaffold_2677 | 122588 | Inactive glucose-1-phosphate adenylyltransferase small subunit 2, chloroplastic (ADP-Glc pyrophosphorylase small subunit-like) (ADP-glucose pyrophosphorylase small subunit 2) (ApS2) |
| Scaffold_2677 | 122590 | Inactive glucose-1-phosphate adenylyltransferase small subunit 2, chloroplastic (ADP-Glc pyrophosphorylase small subunit-like) (ADP-glucose pyrophosphorylase small subunit 2) (ApS2) |
| Scaffold_2677 | 124270 | Glucose-1-phosphate adenylyltransferase small subunit 1, chloroplastic (EC 2.7.7.27) (ADP-glucose pyrophosphorylase) (ADP-glucose synthase) (AGPase B) (Alpha-D-glucose-1-phosphate adenyl transferase) |