| SNP Id | Position | Function |
| Scaffold_2936 | 56328 | Unannotated |
| Scaffold_2936 | 56382 | Unannotated |
| Scaffold_2944 | 27957 | Glucan endo-1,3-beta-glucosidase 9 (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 9) ((1->3)-beta-glucanase 9) (Beta-1,3-endoglucanase 9) (Beta-1,3-glucanase 9) |
| Scaffold_2947 | 41957 | Unannotated |
| Scaffold_2971 | 36779 | ATP-dependent zinc metalloprotease FTSH 2, chloroplastic (OsFTSH2) (EC 3.4.24.-) |
| Scaffold_2974 | 43254 | Dihydroceramide fatty acyl 2-hydroxylase FAH1 (EC 1.14.18.7) (Fatty acid 2-hydroxylase 1) (AtFAH1) |
| Scaffold_2978 | 41668 | Unannotated |
| Scaffold_2980 | 16040 | Unannotated |
| Scaffold_2998 | 38241 | Unannotated |
| Scaffold_2998 | 38327 | Unannotated |
| Scaffold_3001 | 43595 | Pentatricopeptide repeat-containing protein At1g62930, chloroplastic |
| Scaffold_3001 | 43748 | Pentatricopeptide repeat-containing protein At1g62930, chloroplastic |
| Scaffold_3001 | 43815 | Pentatricopeptide repeat-containing protein At1g62930, chloroplastic |
| Scaffold_3004 | 40935 | Unannotated |
| Scaffold_3021 | 10713 | Unannotated |
| Scaffold_3027 | 52390 | Unannotated |
| Scaffold_3029 | 8744 | Unannotated |
| Scaffold_3029 | 13587 | Unannotated |
| Scaffold_3029 | 16547 | Unannotated |
| Scaffold_3030 | 17380 | Unannotated |