| SNP Id | Position | Function |
| Scaffold_3104 | 42741 | Unannotated |
| Scaffold_3104 | 42744 | Unannotated |
| Scaffold_3108 | 21653 | Ribonuclease TUDOR 1 (AtTudor1) (TUDOR-SN protein 1) (EC 3.1.-.-) |
| Scaffold_3108 | 22518 | Ribonuclease TUDOR 1 (AtTudor1) (TUDOR-SN protein 1) (EC 3.1.-.-) |
| Scaffold_3115 | 12409 | Unannotated |
| Scaffold_3115 | 13655 | Unannotated |
| Scaffold_3116 | 5940 | Unannotated |
| Scaffold_3120 | 41205 | Unannotated |
| Scaffold_3121 | 21360 | Protein ABCI12, chloroplastic (ABC transporter I family member 12) (ABC transporter ABCI.12) (AtABCI12) |
| Scaffold_3122 | 41265 | Unannotated |
| Scaffold_3124 | 59467 | O-fucosyltransferase 39 (O-FucT-39) (EC 2.4.1.-) (O-fucosyltransferase family protein) |
| Scaffold_3128 | 77 | Unannotated |
| Scaffold_3128 | 167 | Unannotated |
| Scaffold_3132 | 27246 | Unannotated |
| Scaffold_3132 | 27341 | Unannotated |
| Scaffold_3135 | 43610 | Unannotated |
| Scaffold_3140 | 4351 | Unannotated |
| Scaffold_3140 | 4808 | Pantothenate kinase 2 (AtPANK2) (EC 2.7.1.33) (Pantothenic acid kinase 2) |
| Scaffold_3140 | 4944 | Unannotated |
| Scaffold_3149 | 13693 | Unannotated |