| SNP Id | Position | Function |
| Scaffold_3149 | 14021 | Unannotated |
| Scaffold_3149 | 14041 | Unannotated |
| Scaffold_3149 | 14101 | Unannotated |
| Scaffold_3155 | 20181 | Unannotated |
| Scaffold_3156 | 2043 | Unannotated |
| Scaffold_3156 | 2045 | Unannotated |
| Scaffold_3160 | 23527 | Unannotated |
| Scaffold_3162 | 42838 | Unannotated |
| Scaffold_3166 | 51282 | Unannotated |
| Scaffold_3166 | 51283 | Unannotated |
| Scaffold_3167 | 44681 | Unannotated |
| Scaffold_3167 | 44810 | Unannotated |
| Scaffold_3167 | 44869 | Flavin mononucleotide hydrolase 1, chloroplatic (AtcpFHy1) (EC 3.1.3.102) (5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase) (AtcpFHy1/PyrP1) (EC 3.1.3.104) (5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione 5'-phosphate phosphatase) (ARPP phosphata |
| Scaffold_3167 | 45113 | Unannotated |
| Scaffold_3177 | 26700 | Unannotated |
| Scaffold_3177 | 26787 | Unannotated |
| Scaffold_3177 | 26804 | Unannotated |
| Scaffold_3180 | 32892 | Unannotated |
| Scaffold_3180 | 33336 | Unannotated |
| Scaffold_3180 | 33338 | Unannotated |