| SNP Id | Position | Function |
| Scaffold_3187 | 18249 | Unannotated |
| Scaffold_3192 | 77 | Unannotated |
| Scaffold_3196 | 12827 | Unannotated |
| Scaffold_3200 | 7782 | Unannotated |
| Scaffold_3203 | 28062 | Unannotated |
| Scaffold_3203 | 28127 | Unannotated |
| Scaffold_3203 | 28128 | Unannotated |
| Scaffold_3221 | 36318 | Unannotated |
| Scaffold_3221 | 36346 | Unannotated |
| Scaffold_3221 | 36347 | Unannotated |
| Scaffold_3244 | 18148 | Unannotated |
| Scaffold_3244 | 18253 | Unannotated |
| Scaffold_3257 | 30704 | Unannotated |
| Scaffold_3259 | 15885 | 7-deoxyloganetin glucosyltransferase (EC 2.4.1.324) (Genipin glucosyltransferase) (UDP-glucose glucosyltransferase 2) (GjUGT2) (UDP-glycosyltransferase 85A24) |
| Scaffold_3269 | 44098 | Unannotated |
| Scaffold_3274 | 45957 | Unannotated |
| Scaffold_3274 | 56714 | Unannotated |
| Scaffold_3280 | 3853 | Unannotated |
| Scaffold_3280 | 3974 | Unannotated |
| Scaffold_3280 | 4398 | Unannotated |