| SNP Id | Position | Function |
| Scaffold_3516 | 58250 | Unannotated |
| Scaffold_3516 | 68329 | Unannotated |
| Scaffold_3527 | 24369 | Unannotated |
| Scaffold_3532 | 30344 | Unannotated |
| Scaffold_3532 | 30345 | Unannotated |
| Scaffold_3532 | 32253 | Two-component response regulator-like APRR1 (ABI3-interacting protein 1) (Pseudo-response regulator 1) (Timing of CAB expression 1) |
| Scaffold_3532 | 32256 | Two-component response regulator-like APRR1 (ABI3-interacting protein 1) (Pseudo-response regulator 1) (Timing of CAB expression 1) |
| Scaffold_3536 | 24016 | Unannotated |
| Scaffold_3536 | 35642 | Unannotated |
| Scaffold_3538 | 30609 | Unannotated |
| Scaffold_3538 | 30666 | Unannotated |
| Scaffold_3544 | 3078 | RNA polymerase II C-terminal domain phosphatase-like 1 (FCP-like 1) (EC 3.1.3.16) (Carboxyl-terminal phosphatase-like 1) (AtCPL1) (CTD phosphatase-like 1) (Protein FIERY 2) (Protein JASMONATE OVEREXPRESSING 1) (Protein SHINY 4) |
| Scaffold_3544 | 3156 | RNA polymerase II C-terminal domain phosphatase-like 1 (FCP-like 1) (EC 3.1.3.16) (Carboxyl-terminal phosphatase-like 1) (AtCPL1) (CTD phosphatase-like 1) (Protein FIERY 2) (Protein JASMONATE OVEREXPRESSING 1) (Protein SHINY 4) |
| Scaffold_3544 | 3174 | RNA polymerase II C-terminal domain phosphatase-like 1 (FCP-like 1) (EC 3.1.3.16) (Carboxyl-terminal phosphatase-like 1) (AtCPL1) (CTD phosphatase-like 1) (Protein FIERY 2) (Protein JASMONATE OVEREXPRESSING 1) (Protein SHINY 4) |
| Scaffold_3544 | 22802 | Unannotated |
| Scaffold_3544 | 43499 | Unannotated |
| Scaffold_3545 | 8510 | Unannotated |
| Scaffold_3547 | 28440 | Unannotated |
| Scaffold_3567 | 25805 | Unannotated |
| Scaffold_3574 | 51034 | Unannotated |