| SNP Id | Position | Function |
| Scaffold_3798 | 29362 | Probable sodium/metabolite cotransporter BASS4, chloroplastic (Bile acid transporter 4) (Bile acid-sodium symporter family protein 4) |
| Scaffold_3798 | 42183 | Unannotated |
| Scaffold_3808 | 27337 | Unannotated |
| Scaffold_3808 | 27394 | Unannotated |
| Scaffold_3808 | 27438 | Unannotated |
| Scaffold_3808 | 27457 | Unannotated |
| Scaffold_3809 | 4582 | Transcriptional corepressor LEUNIG_HOMOLOG (Protein MUCILAGE-MODIFIED 1) |
| Scaffold_3810 | 53460 | Unannotated |
| Scaffold_3811 | 47948 | Fasciclin-like arabinogalactan protein 16 |
| Scaffold_3811 | 56862 | Unannotated |
| Scaffold_3811 | 56863 | Unannotated |
| Scaffold_3811 | 58257 | Unannotated |
| Scaffold_3811 | 58382 | Unannotated |
| Scaffold_3814 | 36626 | Unannotated |
| Scaffold_3832 | 31543 | Unannotated |
| Scaffold_3834 | 31156 | Unannotated |
| Scaffold_3850 | 16709 | Unannotated |
| Scaffold_3850 | 16712 | Unannotated |
| Scaffold_3856 | 70047 | Unannotated |
| Scaffold_3860 | 16461 | Unannotated |