| SNP Id | Position | Function |
| Scaffold_4006 | 3889 | Unannotated |
| Scaffold_4006 | 4188 | Unannotated |
| Scaffold_4006 | 4653 | Unannotated |
| Scaffold_4006 | 4699 | Unannotated |
| Scaffold_4007 | 73152 | Unannotated |
| Scaffold_4013 | 3620 | Unannotated |
| Scaffold_4013 | 3848 | Unannotated |
| Scaffold_4013 | 4029 | Unannotated |
| Scaffold_4013 | 4032 | Unannotated |
| Scaffold_2 | 1099975 | LRR receptor-like serine/threonine-protein kinase (EC 2.7.11.1) (LRR receptor-like serine/threonine-protein kinase At4g26540) (Protein RECEPTOR OF RGF1) (Protein RGF1 INSENSITIVE 3) |
| Scaffold_2 | 1100203 | LRR receptor-like serine/threonine-protein kinase (EC 2.7.11.1) (LRR receptor-like serine/threonine-protein kinase At4g26540) (Protein RECEPTOR OF RGF1) (Protein RGF1 INSENSITIVE 3) |
| Scaffold_2 | 1104334 | LRR receptor-like serine/threonine-protein kinase (EC 2.7.11.1) (LRR receptor-like serine/threonine-protein kinase At4g26540) (Protein RECEPTOR OF RGF1) (Protein RGF1 INSENSITIVE 3) |
| Scaffold_2 | 1104340 | LRR receptor-like serine/threonine-protein kinase (EC 2.7.11.1) (LRR receptor-like serine/threonine-protein kinase At4g26540) (Protein RECEPTOR OF RGF1) (Protein RGF1 INSENSITIVE 3) |
| Scaffold_2 | 1105395 | Probable LRR receptor-like serine/threonine-protein kinase At4g36180 (EC 2.7.11.1) |
| Scaffold_5 | 1160032 | Protein INVOLVED IN DE NOVO 2 (Protein RNA-DIRECTED DNA METHYLATION 12) |
| Scaffold_6 | 1960462 | Aconitate hydratase 3, mitochondrial (Aconitase 3) (mACO1) (EC 4.2.1.3) (Citrate hydro-lyase 3) |
| Scaffold_6 | 2348965 | Ribosomal RNA small subunit methyltransferase (EC 2.1.1.-) (18S nuclear rRNA (adenine(1785)-N(6)/adenine(1786)-N(6))-dimethyltransferase) (Adenosine dimethyl transferase 1A) (Dimethyladenosine transferase 1A) |
| Scaffold_6 | 2349409 | Ribosomal RNA small subunit methyltransferase (EC 2.1.1.-) (18S nuclear rRNA (adenine(1785)-N(6)/adenine(1786)-N(6))-dimethyltransferase) (Adenosine dimethyl transferase 1A) (Dimethyladenosine transferase 1A) |
| Scaffold_8 | 1332318 | Vacuolar-sorting receptor 1 (AtVSR1) (BP80-like protein b) (AtBP80b) (Epidermal growth factor receptor-like protein 1) (AtELP) (AtELP1) (Spot 3 protein) |
| Scaffold_11 | 690283 | Chalcone synthase 1 (EC 2.3.1.74) (Naringenin-chalcone synthase 1) |