| SNP Id | Position | Function |
| Scaffold_50 | 201739 | Receptor-like protein 2 (AtRLP2) |
| Scaffold_50 | 201797 | Receptor-like protein 2 (AtRLP2) |
| Scaffold_50 | 211167 | Receptor-like protein 7 (AtRLP7) |
| Scaffold_51 | 187056 | Autophagy-related protein 18a (AtATG18a) (Protein PEROXISOME UNUSUAL POSITIONING 2) |
| Scaffold_51 | 308625 | Probable LRR receptor-like serine/threonine-protein kinase At1g67720 (EC 2.7.11.1) |
| Scaffold_52 | 1122084 | 60S ribosomal protein L10-1 (Protein QM) (Putative tumor suppressor SC34) |
| Scaffold_52 | 1122453 | 60S ribosomal protein L10-1 (Protein QM) (Putative tumor suppressor SC34) |
| Scaffold_54 | 216419 | CHD3-type chromatin-remodeling factor PICKLE (EC 3.6.4.-) (Protein CHROMATIN REMODELING 6) (AtCHR6) (Protein GYMNOS) |
| Scaffold_55 | 671307 | Pentatricopeptide repeat-containing protein At4g18520, chloroplastic (Protein PIGMENT-DEFICIENT MUTANT 1) (Protein SEEDLING LETHAL 1) |
| Scaffold_55 | 671619 | Pentatricopeptide repeat-containing protein At4g18520, chloroplastic (Protein PIGMENT-DEFICIENT MUTANT 1) (Protein SEEDLING LETHAL 1) |
| Scaffold_56 | 170427 | ATP-dependent zinc metalloprotease FTSH 7, chloroplastic (OsFTSH7) (EC 3.4.24.-) |
| Scaffold_57 | 940867 | Probable LRR receptor-like serine/threonine-protein kinase At1g12460 (EC 2.7.11.1) |
| Scaffold_57 | 941008 | Probable LRR receptor-like serine/threonine-protein kinase At1g12460 (EC 2.7.11.1) |
| Scaffold_57 | 941044 | Probable LRR receptor-like serine/threonine-protein kinase At1g12460 (EC 2.7.11.1) |
| Scaffold_57 | 1525031 | Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial (Glu-AdT subunit B) (EC 6.3.5.-) |
| Scaffold_57 | 1525098 | Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial (Glu-AdT subunit B) (EC 6.3.5.-) |
| Scaffold_57 | 1525594 | Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial (Glu-AdT subunit B) (EC 6.3.5.-) |
| Scaffold_57 | 1526022 | Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial (Glu-AdT subunit B) (EC 6.3.5.-) |
| Scaffold_57 | 1527029 | Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial (Glu-AdT subunit B) (EC 6.3.5.-) |
| Scaffold_58 | 1229565 | Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) (Glutamine-dependent asparagine synthetase) |