| SNP Id | Position | Function |
| Scaffold_59 | 559315 | Eukaryotic translation initiation factor 6-2 (AteIF-6;2) |
| Scaffold_60 | 71080 | Mitogen-activated protein kinase homolog MMK2 (EC 2.7.11.24) |
| Scaffold_62 | 257160 | Trans-resveratrol di-O-methyltransferase (EC 2.1.1.240) (Resveratrol O-methyltransferase) (ROMT) (VvROMT) |
| Scaffold_63 | 759624 | Thioredoxin-like protein HCF164, chloroplastic (Protein HIGH CHLOROPHYLL FLUORESCENCE 164) |
| Scaffold_63 | 1351092 | G2/mitotic-specific cyclin S13-6 (B-like cyclin) |
| Scaffold_64 | 962543 | Cysteine synthase (CSase) (EC 2.5.1.47) (Beta-PA/CSase) (EC 2.5.1.51) (Beta-pyrazolylalanine synthase) (EC 4.2.1.50) (L-mimosine synthase) (EC 2.5.1.52) (O-acetylserine (thiol)-lyase) (OAS-TL) (O-acetylserine sulfhydrylase) |
| Scaffold_66 | 870630 | Mediator of RNA polymerase II transcription subunit 33B (Protein REDUCED EPIDERMAL FLUORESCENCE 4) (AtREF4) |
| Scaffold_66 | 1039119 | Membrane-bound transcription factor site-2 protease homolog (EC 3.4.24.-) (Endopeptidase S2P) |
| Scaffold_69 | 696883 | Inducible nitrate reductase [NADH] 2 (NR) (EC 1.7.1.1) |
| Scaffold_69 | 696886 | Inducible nitrate reductase [NADH] 2 (NR) (EC 1.7.1.1) |
| Scaffold_70 | 1102791 | Chloride channel protein CLC-b (AtCLC-b) (CBS domain-containing protein CBSCLC7) |
| Scaffold_71 | 1223577 | Phenolic glucoside malonyltransferase 2 (EC 2.3.1.-) |
| Scaffold_71 | 1223745 | Phenolic glucoside malonyltransferase 2 (EC 2.3.1.-) |
| Scaffold_72 | 626327 | ABSCISIC ACID-INSENSITIVE 5-like protein 5 (ABA-responsive element-binding protein 1) (Abscisic acid responsive elements-binding factor 2) (ABRE-binding factor 2) (bZIP transcription factor 36) (AtbZIP36) |
| Scaffold_77 | 204036 | SUMO-activating enzyme subunit 1A (SUMO-activating enzyme subunit 1-1) (Ubiquitin-like 1-activating enzyme E1A) |
| Scaffold_83 | 293928 | Probable serine/threonine-protein kinase WNK5 (AtWNK5) (EC 2.7.11.1) (Protein kinase with no lysine 5) |
| Scaffold_86 | 181727 | NADPH-dependent aldehyde reductase-like protein, chloroplastic (EC 1.1.1.-) |
| Scaffold_86 | 181886 | NADPH-dependent aldehyde reductase-like protein, chloroplastic (EC 1.1.1.-) |
| Scaffold_86 | 246364 | ATP synthase subunit gamma, mitochondrial (F-ATPase gamma subunit) |
| Scaffold_92 | 114122 | Aminopeptidase M1 (EC 3.4.11.2) (Alpha-aminoacylpeptide hydrolase) |