| SNP Id | Position | Function |
| Scaffold_167 | 86085 | Actin |
| Scaffold_168 | 4552 | Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 (EC 3.6.4.13) (DEAH RNA helicase homolog PRP22) |
| Scaffold_168 | 275956 | Nucleolar GTP-binding protein 1 |
| Scaffold_168 | 276141 | Nucleolar GTP-binding protein 1 |
| Scaffold_170 | 515667 | 7-deoxyloganetic acid glucosyltransferase (EC 2.4.1.323) (UDP-glucose glucosyltransferase 8) (CrUGT8) (UDP-glycosyltransferase 709C2) |
| Scaffold_174 | 332829 | Myosin-6 (AtMYA2) |
| Scaffold_175 | 26103 | Cell division cycle protein 27 homolog B (CDC27 homolog B) (Protein HOBBIT) |
| Scaffold_175 | 222705 | 40S ribosomal protein S5 (Fragment) |
| Scaffold_175 | 700181 | Midasin (AtMDN1) (Dynein-related AAA-ATPase MDN1) (MIDAS-containing protein 1) (Protein DWARF AND SHORT ROOT 1) |
| Scaffold_175 | 700398 | Midasin (AtMDN1) (Dynein-related AAA-ATPase MDN1) (MIDAS-containing protein 1) (Protein DWARF AND SHORT ROOT 1) |
| Scaffold_177 | 227508 | Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (EC 1.2.1.12) |
| Scaffold_178 | 21036 | ABC transporter G family member 13 (ABC transporter ABCG.13) (AtABCG13) (White-brown complex homolog protein 13) (AtWBC13) |
| Scaffold_178 | 21295 | ABC transporter G family member 13 (ABC transporter ABCG.13) (AtABCG13) (White-brown complex homolog protein 13) (AtWBC13) |
| Scaffold_178 | 21304 | ABC transporter G family member 13 (ABC transporter ABCG.13) (AtABCG13) (White-brown complex homolog protein 13) (AtWBC13) |
| Scaffold_178 | 470138 | Histone deacetylase 9 (EC 3.5.1.98) |
| Scaffold_180 | 90129 | Ammonium transporter 3 member 1 (OsAMT3;1) |
| Scaffold_181 | 425642 | Calcium-dependent protein kinase 1 (OsCDPK1) (OsCPK1) (EC 2.7.11.1) |
| Scaffold_181 | 850028 | DNA-directed RNA polymerase II subunit 2 (DNA-directed RNA polymerase II 135 kDa polypeptide) (DNA-directed RNA polymerase II subunit RPB2) (RNA polymerase II subunit 2) (RNA polymerase II subunit B2) (EC 2.7.7.6) (Protein EMBRYO DEFECTIVE 1989) |
| Scaffold_221 | 86018 | Kunitz-type trypsin inhibitor-like 2 protein (Protease inhibitor from pea 2) |
| Scaffold_248 | 7088 | 12-oxophytodienoate reductase 1 (EC 1.3.1.42) (12-oxophytodienoate-10,11-reductase 1) (OPDA-reductase 1) (LeOPR1) |