| SNP Id | Position | Function |
| Scaffold_254 | 61952 | GDSL esterase/lipase At5g14450 (EC 3.1.1.-) (Extracellular lipase At5g14450) |
| Scaffold_288 | 53605 | Putative bark agglutinin LECRPA3 (Fragment) |
| Scaffold_288 | 53734 | Putative bark agglutinin LECRPA3 (Fragment) |
| Scaffold_296 | 24985 | BTB/POZ domain-containing protein At2g30600 |
| Scaffold_335 | 43286 | Cellulose synthase A catalytic subunit 1 [UDP-forming] (AtCesA1) (EC 2.4.1.12) (Protein RADIALLY SWOLLEN 1) (AtRSW1) |
| Scaffold_338 | 52462 | Probable zinc metalloprotease EGY2, chloroplastic (EC 3.4.24.-) (Protein ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 2) |
| Scaffold_343 | 65493 | 3-dehydroquinate synthase, chloroplastic (EC 4.2.3.4) |
| Scaffold_346 | 56483 | Probable LRR receptor-like serine/threonine-protein kinase At1g53440 (EC 2.7.11.1) |
| Scaffold_349 | 6343 | Protein TOC75-3, chloroplastic (75 kDa translocon at the outer-envelope-membrane of chloroplasts 3) (AtTOC75-III) |
| Scaffold_349 | 36672 | Pyrophosphate-energized vacuolar membrane proton pump (EC 3.6.1.1) (Pyrophosphate-energized inorganic pyrophosphatase) (H(+)-PPase) (Vacuolar H(+)-pyrophosphatase) |
| Scaffold_368 | 5349 | Phosphoribulokinase, chloroplastic (PRK) (PRKase) (EC 2.7.1.19) (Phosphopentokinase) |
| Scaffold_464 | 45633 | (3S,6E)-nerolidol synthase 2, chloroplastic/mitochondrial (FaNES2) (EC 4.2.3.48) |
| Scaffold_464 | 46015 | Myrcene synthase, chloroplastic (EC 4.2.3.15) |
| Scaffold_487 | 32482 | Protein argonaute 4A (OsAGO4a) |
| Scaffold_494 | 4073 | Protein NDH-DEPENDENT CYCLIC ELECTRON FLOW 5 |
| Scaffold_544 | 51099 | Carbon catabolite repressor protein 4 homolog 5 (CCR4 homolog 5) (EC 3.1.13.4) |
| Scaffold_575 | 65969 | Puromycin-sensitive aminopeptidase (PSA) (EC 3.4.11.14) (Cytosol alanyl aminopeptidase) (AAP-S) |
| Scaffold_630 | 65356 | Protein phosphatase 2C 7 (AtPP2C07) (EC 3.1.3.16) (Protein HYPERSENSITIVE TO ABA 2) (Protein phosphatase 2C HAB2) (PP2C HAB2) |
| Scaffold_632 | 59485 | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 (EC 2.4.99.18) (Ribophorin II) (RPN-II) (Ribophorin-2) |
| Scaffold_654 | 23903 | Probable LRR receptor-like serine/threonine-protein kinase At3g47570 (EC 2.7.11.1) |