| SNP Id | Position | Function |
| Scaffold_684 | 27638 | Pentatricopeptide repeat-containing protein At3g06430, chloroplastic (Protein EMBRYO DEFECTIVE 2750) |
| Scaffold_760 | 22357 | Cytochrome P450 82A2 (EC 1.14.-.-) (Cytochrome P450 CP4) |
| Scaffold_801 | 18010 | IAA-amino acid hydrolase ILR1-like 2 (EC 3.5.1.-) |
| Scaffold_802 | 2219 | Dihydropyrimidinase (EC 3.5.2.2) (Dihydropyrimidine amidohydrolase) (Protein PYRIMIDINE 2) |
| Scaffold_802 | 2234 | Dihydropyrimidinase (EC 3.5.2.2) (Dihydropyrimidine amidohydrolase) (Protein PYRIMIDINE 2) |
| Scaffold_812 | 60251 | Ribose-phosphate pyrophosphokinase 4 (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthase 4) |
| Scaffold_863 | 23676 | Ferredoxin-dependent glutamate synthase, chloroplastic (EC 1.4.7.1) (Fd-GOGAT) |
| Scaffold_886 | 4806 | Putative disease resistance protein At5g47280 |
| Scaffold_886 | 4807 | Putative disease resistance protein At5g47280 |
| Scaffold_996 | 1878 | Ubiquitin receptor RAD23d (AtRAD23d) (Putative DNA repair protein RAD23-4) (RAD23-like protein 4) (AtRAD23-4) |
| Scaffold_1066 | 49970 | Uncharacterized acetyltransferase At3g50280 (EC 2.3.1.-) |
| Scaffold_1073 | 47050 | Cytochrome P450 82A4 (EC 1.14.-.-) (Cytochrome P450 CP9) |
| Scaffold_1081 | 1337 | Peptidyl-prolyl cis-trans isomerase CYP20-1 (PPIase CYP20-1) (EC 5.2.1.8) (Cyclophilin of 20 kDa 1) (Rotamase CYP20-1) (Rotamase cyclophilin-7) |
| Scaffold_1081 | 1338 | Peptidyl-prolyl cis-trans isomerase CYP20-1 (PPIase CYP20-1) (EC 5.2.1.8) (Cyclophilin of 20 kDa 1) (Rotamase CYP20-1) (Rotamase cyclophilin-7) |
| Scaffold_1081 | 1435 | Peptidyl-prolyl cis-trans isomerase CYP22 (PPIase CYP22) (EC 5.2.1.8) (Cyclophilin of 22 kDa) (Cyclophilin-22) |
| Scaffold_1088 | 10019 | Nudix hydrolase 8 (AtNUDT8) (EC 3.6.1.-) |
| Scaffold_1088 | 10020 | Nudix hydrolase 8 (AtNUDT8) (EC 3.6.1.-) |
| Scaffold_1089 | 56845 | TMV resistance protein N |
| Scaffold_1109 | 8705 | Protein Asterix |
| Scaffold_1117 | 15649 | 60S ribosomal protein L7-2 |