| SNP Id | Position | Function |
| Scaffold_2474 | 60886 | Calcium-dependent protein kinase 19 (OsCDPK19) (OsCPK19) (EC 2.7.11.1) (Calcium-dependent protein kinase isoform 2) (OsCDPK2) (OsCPK2) |
| Scaffold_2475 | 2599 | Protein tesmin/TSO1-like CXC 5 (AtTCX5) |
| Scaffold_2475 | 2731 | Protein tesmin/TSO1-like CXC 5 (AtTCX5) |
| Scaffold_2480 | 115588 | Organ-specific protein P4 |
| Scaffold_2495 | 104398 | U-box domain-containing protein 30 (EC 2.3.2.27) (Plant U-box protein 30) (RING-type E3 ubiquitin transferase PUB30) |
| Scaffold_2495 | 104506 | U-box domain-containing protein 30 (EC 2.3.2.27) (Plant U-box protein 30) (RING-type E3 ubiquitin transferase PUB30) |
| Scaffold_2498 | 105610 | Transcription termination factor MTERF8, chloroplastic (Mitochondrial transcription termination factor 8) (Protein PLASTID TRANSCRIPTIONALLY ACTIVE 15) |
| Scaffold_2498 | 105657 | Transcription termination factor MTERF8, chloroplastic (Mitochondrial transcription termination factor 8) (Protein PLASTID TRANSCRIPTIONALLY ACTIVE 15) |
| Scaffold_2498 | 105668 | Transcription termination factor MTERF15, mitochondrial (Mitochondrial transcription termination factor 15) |
| Scaffold_2498 | 105791 | Transcription termination factor MTERF15, mitochondrial (Mitochondrial transcription termination factor 15) |
| Scaffold_2498 | 105848 | Transcription termination factor MTERF15, mitochondrial (Mitochondrial transcription termination factor 15) |
| Scaffold_2498 | 106117 | Transcription termination factor MTERF15, mitochondrial (Mitochondrial transcription termination factor 15) |
| Scaffold_2498 | 106149 | Transcription termination factor MTERF15, mitochondrial (Mitochondrial transcription termination factor 15) |
| Scaffold_2498 | 106306 | Transcription termination factor MTERF15, mitochondrial (Mitochondrial transcription termination factor 15) |
| Scaffold_2521 | 113291 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_2521 | 114094 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_2521 | 114111 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_2521 | 114250 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_2521 | 114266 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_2521 | 114281 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |