| SNP Id | Position | Function |
| Scaffold_2531 | 48729 | Uncharacterized acetyltransferase At3g50280 (EC 2.3.1.-) |
| Scaffold_2535 | 13639 | Short-chain dehydrogenase TIC 32, chloroplastic (EC 1.1.1.-) (Translocon at the inner envelope membrane of chloroplasts 32) (PsTIC32) |
| Scaffold_2560 | 92880 | 12-oxophytodienoate reductase 2 (EC 1.3.1.42) (12-oxophytodienoate-10,11-reductase 2) (AtOPR2) (OPDA-reductase 2) |
| Scaffold_2573 | 192 | Cellulose synthase-like protein H1 (EC 2.4.1.-) (OsCslH1) |
| Scaffold_2573 | 438 | Cellulose synthase-like protein H1 (EC 2.4.1.-) (OsCslH1) |
| Scaffold_2574 | 11746 | Uridine nucleosidase 1 (EC 3.2.2.3) (Uridine ribohydrolase 1) |
| Scaffold_2580 | 13121 | DNA-binding protein BIN4 (Protein BRASSINOSTEROID INSENSITIVE 4) (Protein MIDGET) |
| Scaffold_2588 | 54822 | Homoserine kinase (EC 2.7.1.39) (Protein DOWNY MILDEW RESISTANT 1) |
| Scaffold_2612 | 3269 | Probable ethanolamine kinase (EC 2.7.1.82) (Protein EMBRYO DEFECTIVE 1187) |
| Scaffold_2621 | 63723 | Methyl-CpG-binding domain protein 4-like protein (EC 3.2.2.-) (Protein MBD4-like) |
| Scaffold_2637 | 60472 | Cellulose synthase-like protein H1 (EC 2.4.1.-) (OsCslH1) |
| Scaffold_2637 | 60544 | Cellulose synthase-like protein H1 (EC 2.4.1.-) (OsCslH1) |
| Scaffold_2648 | 65615 | Chavicol O-methyltransferase (EC 2.1.1.146) ((Iso)eugenol O-methyltransferase CVOMT1) (S-adenosysl-L-methionine:(Iso)eugenol O-methyltransferase CVOMT1) |
| Scaffold_2667 | 27038 | Receptor-like protein EIX1 (EIX receptor 1) |
| Scaffold_2677 | 124700 | Glucose-1-phosphate adenylyltransferase small subunit 1, chloroplastic (EC 2.7.7.27) (ADP-glucose pyrophosphorylase) (ADP-glucose synthase) (AGPase B) (Alpha-D-glucose-1-phosphate adenyl transferase) |
| Scaffold_2681 | 152782 | Probable 26S proteasome non-ATPase regulatory subunit 3 (26S proteasome subunit S3) (26S proteasome regulatory subunit RPN3) (Nuclear antigen 21D7) |
| Scaffold_2692 | 116957 | Peroxiredoxin Q, chloroplastic (EC 1.11.1.15) (Thioredoxin peroxidase) |
| Scaffold_2693 | 32169 | Endoglucanase 6 (EC 3.2.1.4) (Endo-1,4-beta glucanase 6) |
| Scaffold_2694 | 78611 | Phosphoenolpyruvate carboxylase 4 (AtPPC4) (PEPC 4) (PEPCase 4) (EC 4.1.1.31) |
| Scaffold_2695 | 105961 | UDP-glycosyltransferase 73C2 (EC 2.4.1.-) |