| SNP Id | Position | Function |
| Scaffold_3436 | 38659 | Signal recognition particle 54 kDa protein 2 (SRP54) |
| Scaffold_3440 | 38102 | Mitochondrial adenine nucleotide transporter ADNT1 (Adenine nucleotide transporter 1) |
| Scaffold_3440 | 52000 | Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 (EC 4.2.1.134) (3-hydroxyacyl-CoA dehydratase PASTICCINO 2) (AtPAS2) (HACD) (HCD) (Protein PEPINO) (PEP) (Protein tyrosine phosphatase-like protein) |
| Scaffold_3482 | 43954 | Protein EXORDIUM-like 5 |
| Scaffold_3544 | 3033 | RNA polymerase II C-terminal domain phosphatase-like 1 (FCP-like 1) (EC 3.1.3.16) (Carboxyl-terminal phosphatase-like 1) (AtCPL1) (CTD phosphatase-like 1) (Protein FIERY 2) (Protein JASMONATE OVEREXPRESSING 1) (Protein SHINY 4) |
| Scaffold_3544 | 3146 | RNA polymerase II C-terminal domain phosphatase-like 1 (FCP-like 1) (EC 3.1.3.16) (Carboxyl-terminal phosphatase-like 1) (AtCPL1) (CTD phosphatase-like 1) (Protein FIERY 2) (Protein JASMONATE OVEREXPRESSING 1) (Protein SHINY 4) |
| Scaffold_3578 | 1550 | FACT complex subunit SSRP1 (Facilitates chromatin transcription complex subunit SSRP1) (Recombination signal sequence recognition protein 1) |
| Scaffold_3593 | 65553 | Coumaroyl-CoA:anthocyanidin 3-O-glucoside-6''-O-coumaroyltransferase 1 (EC 2.3.1.-) |
| Scaffold_3635 | 18085 | CLIP-associated protein (AtCLASP) |
| Scaffold_3640 | 12478 | Cell division protein FtsZ homolog 1, chloroplastic (AtFtsZ1) (AtFtsZ1-1) (Chloroplast FtsZ) (CpFtsZ) (Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 10) (Protein PLASTID MOVEMENT IMPAIRED4) |
| Scaffold_3641 | 1877 | Putative methylesterase 14, chloroplastic (AtMES14) (EC 3.1.1.-) |
| Scaffold_3641 | 1915 | Putative methylesterase 14, chloroplastic (AtMES14) (EC 3.1.1.-) |
| Scaffold_3663 | 22800 | Novel plant SNARE 12 (AtNPSN12) |
| Scaffold_3663 | 22802 | Novel plant SNARE 12 (AtNPSN12) |
| Scaffold_3724 | 70733 | Protein tesmin/TSO1-like CXC 2 (AtTCX2) (Protein TSO1-like 2) (Protein SOL2) |
| Scaffold_3740 | 41311 | Uncharacterized protein At1g01500 |
| Scaffold_3771 | 12503 | Probable LRR receptor-like serine/threonine-protein kinase At2g16250 (EC 2.7.11.1) |
| Scaffold_3789 | 20401 | T-complex protein 1 subunit theta (TCP-1-theta) (CCT-theta) (Chaperonin CCT8) (Chaperonin containing TCP1 8) (TCP1-ring complex) |
| Scaffold_3789 | 20458 | T-complex protein 1 subunit theta (TCP-1-theta) (CCT-theta) (Chaperonin CCT8) (Chaperonin containing TCP1 8) (TCP1-ring complex) |
| Scaffold_3789 | 21459 | T-complex protein 1 subunit theta (TCP-1-theta) (CCT-theta) (Chaperonin CCT8) (Chaperonin containing TCP1 8) (TCP1-ring complex) |