| SNP Id | Position | Function |
| Scaffold_3798 | 6411 | 12-oxophytodienoate reductase 3 (EC 1.3.1.42) (12-oxophytodienoate-10,11-reductase 3) (OPDA-reductase 3) (LeOPR3) |
| Scaffold_3798 | 6412 | 12-oxophytodienoate reductase 3 (EC 1.3.1.42) (12-oxophytodienoate-10,11-reductase 3) (OPDA-reductase 3) (LeOPR3) |
| Scaffold_3798 | 29415 | Probable sodium/metabolite cotransporter BASS4, chloroplastic (Bile acid transporter 4) (Bile acid-sodium symporter family protein 4) |
| Scaffold_3810 | 54998 | Uncharacterized protein At2g37660, chloroplastic |
| Scaffold_3842 | 4017 | Putative AC9 transposase |
| Scaffold_3860 | 16930 | ATP-dependent zinc metalloprotease FTSH 2, chloroplastic (AtFTSH2) (EC 3.4.24.-) (Protein VARIEGATED 2) |
| Scaffold_3862 | 7584 | SUMO-conjugating enzyme UBC9 (EC 2.3.2.-) (RING-type E3 SUMO transferase UBC9) (UBCAT4B) (Ubiquitin carrier protein 9) (Ubiquitin-conjugating enzyme E2 9) (Ubiquitin-conjugating enzyme E2-17 kDa) (Ubiquitin-protein ligase 9) |
| Scaffold_3862 | 35206 | Eukaryotic translation initiation factor 3 subunit B (eIF3b) (eIF-3-eta) (eIF3 p110) (p82) |
| Scaffold_3862 | 35968 | Eukaryotic translation initiation factor 3 subunit B (eIF3b) (eIF-3-eta) (eIF3 p110) (p82) |
| Scaffold_3862 | 36136 | Eukaryotic translation initiation factor 3 subunit B (eIF3b) (eIF-3-eta) (eIF3 p110) (p82) |
| Scaffold_3903 | 26985 | Probable LRR receptor-like serine/threonine-protein kinase At1g07650 (EC 2.7.11.1) |
| Scaffold_3937 | 2990 | NEDD8-conjugating enzyme Ubc12 (EC 2.3.2.-) (RUB1 carrier protein 1) (RUB1-conjugating enzyme 1) |
| Scaffold_3962 | 28602 | Protein WHAT'S THIS FACTOR 1 homolog |