| SNP Id | Position | Function |
| Scaffold_5 | 1602562 | Unannotated |
| Scaffold_6 | 70754 | Unannotated |
| Scaffold_6 | 412713 | Unannotated |
| Scaffold_6 | 522098 | Unannotated |
| Scaffold_6 | 526863 | Unannotated |
| Scaffold_6 | 582301 | Unannotated |
| Scaffold_6 | 718474 | Unannotated |
| Scaffold_6 | 718476 | Unannotated |
| Scaffold_6 | 753322 | Unannotated |
| Scaffold_6 | 813840 | Unannotated |
| Scaffold_6 | 814401 | Unannotated |
| Scaffold_6 | 814402 | Unannotated |
| Scaffold_6 | 1010294 | Unannotated |
| Scaffold_6 | 1053465 | Unannotated |
| Scaffold_6 | 1318443 | Unannotated |
| Scaffold_6 | 1331513 | Unannotated |
| Scaffold_6 | 1686832 | Unannotated |
| Scaffold_6 | 1701124 | Unannotated |
| Scaffold_6 | 1714953 | Glycerol-3-phosphate acyltransferase 1 (AtGPAT1) (EC 2.3.1.15) |
| Scaffold_6 | 1788380 | Unannotated |