| SNP Id | Position | Function |
| Scaffold_50 | 933108 | Unannotated |
| Scaffold_50 | 933204 | Unannotated |
| Scaffold_50 | 1104643 | Unannotated |
| Scaffold_50 | 1105472 | Unannotated |
| Scaffold_50 | 1134824 | Unannotated |
| Scaffold_50 | 1216435 | Unannotated |
| Scaffold_50 | 1216460 | Unannotated |
| Scaffold_50 | 1221169 | Unannotated |
| Scaffold_50 | 1548202 | Unannotated |
| Scaffold_50 | 1548204 | Unannotated |
| Scaffold_50 | 1548371 | Unannotated |
| Scaffold_51 | 24777 | Protein translocase subunit SecA, chloroplastic |
| Scaffold_51 | 44937 | Unannotated |
| Scaffold_51 | 173555 | Unannotated |
| Scaffold_51 | 188678 | Autophagy-related protein 18a (AtATG18a) (Protein PEROXISOME UNUSUAL POSITIONING 2) |
| Scaffold_51 | 188680 | Autophagy-related protein 18a (AtATG18a) (Protein PEROXISOME UNUSUAL POSITIONING 2) |
| Scaffold_51 | 268011 | Unannotated |
| Scaffold_51 | 269647 | Unannotated |
| Scaffold_51 | 373064 | Unannotated |
| Scaffold_51 | 651952 | Unannotated |