| SNP Id | Position | Function |
| Scaffold_237 | 12625 | Unannotated |
| Scaffold_239 | 75933 | Unannotated |
| Scaffold_239 | 75934 | Unannotated |
| Scaffold_241 | 33571 | Unannotated |
| Scaffold_242 | 73740 | 28 kDa ribonucleoprotein, chloroplastic (28RNP) |
| Scaffold_243 | 71111 | Unannotated |
| Scaffold_248 | 2994 | Unannotated |
| Scaffold_249 | 12158 | Holliday junction resolvase MOC1, chloroplastic (EC 3.1.22.4) (Protein MONOKARYOTIC CHLOROPLAST 1) (AtMOC1) |
| Scaffold_251 | 54956 | Unannotated |
| Scaffold_251 | 54959 | Unannotated |
| Scaffold_251 | 84350 | Unannotated |
| Scaffold_270 | 55631 | Unannotated |
| Scaffold_273 | 51621 | Unannotated |
| Scaffold_273 | 55272 | WPP domain-interacting protein 3 |
| Scaffold_285 | 25356 | Unannotated |
| Scaffold_286 | 24686 | Unannotated |
| Scaffold_287 | 846 | Unannotated |
| Scaffold_288 | 53589 | Putative bark agglutinin LECRPA3 (Fragment) |
| Scaffold_292 | 50648 | Unannotated |
| Scaffold_292 | 50650 | Unannotated |