| SNP Id | Position | Function |
| Scaffold_329 | 28173 | Unannotated |
| Scaffold_332 | 69392 | Unannotated |
| Scaffold_333 | 31297 | Unannotated |
| Scaffold_335 | 43321 | Cellulose synthase A catalytic subunit 1 [UDP-forming] (AtCesA1) (EC 2.4.1.12) (Protein RADIALLY SWOLLEN 1) (AtRSW1) |
| Scaffold_335 | 52506 | Unannotated |
| Scaffold_335 | 52553 | Unannotated |
| Scaffold_335 | 66851 | Unannotated |
| Scaffold_336 | 30924 | Unannotated |
| Scaffold_337 | 5383 | Unannotated |
| Scaffold_337 | 5436 | Unannotated |
| Scaffold_338 | 51918 | Probable zinc metalloprotease EGY2, chloroplastic (EC 3.4.24.-) (Protein ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 2) |
| Scaffold_341 | 31515 | Unannotated |
| Scaffold_346 | 57358 | Probable LRR receptor-like serine/threonine-protein kinase At1g56140 (EC 2.7.11.1) |
| Scaffold_349 | 6349 | Protein TOC75-3, chloroplastic (75 kDa translocon at the outer-envelope-membrane of chloroplasts 3) (AtTOC75-III) |
| Scaffold_349 | 6368 | Protein TOC75-3, chloroplastic (75 kDa translocon at the outer-envelope-membrane of chloroplasts 3) (AtTOC75-III) |
| Scaffold_349 | 36709 | Pyrophosphate-energized vacuolar membrane proton pump (EC 3.6.1.1) (Pyrophosphate-energized inorganic pyrophosphatase) (H(+)-PPase) (Vacuolar H(+)-pyrophosphatase) |
| Scaffold_352 | 58235 | Unannotated |
| Scaffold_355 | 15190 | Unannotated |
| Scaffold_361 | 36233 | Unannotated |
| Scaffold_368 | 5059 | Unannotated |