| SNP Id | Position | Function |
| Scaffold_368 | 5062 | Unannotated |
| Scaffold_368 | 5351 | Phosphoribulokinase, chloroplastic (PRK) (PRKase) (EC 2.7.1.19) (Phosphopentokinase) |
| Scaffold_375 | 21149 | Unannotated |
| Scaffold_375 | 21165 | Unannotated |
| Scaffold_380 | 56374 | Unannotated |
| Scaffold_382 | 52581 | Unannotated |
| Scaffold_384 | 2713 | Unannotated |
| Scaffold_385 | 71736 | Unannotated |
| Scaffold_386 | 76711 | Probable inactive shikimate kinase like 2, chloroplastic (AtSKL2) |
| Scaffold_392 | 36658 | Unannotated |
| Scaffold_398 | 9414 | Unannotated |
| Scaffold_400 | 43042 | Unannotated |
| Scaffold_400 | 63974 | Unannotated |
| Scaffold_400 | 64124 | Unannotated |
| Scaffold_401 | 15310 | Unannotated |
| Scaffold_402 | 34697 | Unannotated |
| Scaffold_402 | 34698 | Unannotated |
| Scaffold_404 | 64506 | Unannotated |
| Scaffold_411 | 45774 | Unannotated |
| Scaffold_412 | 9102 | Unannotated |