| SNP Id | Position | Function |
| Scaffold_436 | 10646 | Unannotated |
| Scaffold_438 | 41803 | Unannotated |
| Scaffold_445 | 20329 | Unannotated |
| Scaffold_446 | 33551 | Unannotated |
| Scaffold_448 | 27350 | Unannotated |
| Scaffold_448 | 47433 | Unannotated |
| Scaffold_455 | 63194 | Unannotated |
| Scaffold_455 | 63530 | Unannotated |
| Scaffold_458 | 9041 | Unannotated |
| Scaffold_458 | 28973 | Unannotated |
| Scaffold_460 | 8148 | Unannotated |
| Scaffold_463 | 20850 | Unannotated |
| Scaffold_463 | 22599 | Unannotated |
| Scaffold_463 | 22846 | Unannotated |
| Scaffold_481 | 42565 | Unannotated |
| Scaffold_481 | 42567 | Unannotated |
| Scaffold_484 | 30244 | Unannotated |
| Scaffold_486 | 44675 | GDSL esterase/lipase At5g18430 (EC 3.1.1.-) (Extracellular lipase At5g18430) |
| Scaffold_486 | 44676 | GDSL esterase/lipase At5g18430 (EC 3.1.1.-) (Extracellular lipase At5g18430) |
| Scaffold_487 | 31865 | Protein argonaute 4A (OsAGO4a) |