| SNP Id | Position | Reference Allele | Reference Length | Alternate Allele | Alternate Length | Status |
| Scaffold_9 | 913270 | ATTTTTTTTTT | 11 | ATTTTTTTTT | 10 | INS |
| Scaffold_9 | 1083960 | CTTTTTTTTTT | 11 | CTTTTTTTTTTT | 12 | DEL |
| Scaffold_9 | 1145139 | CTTTTTTTTT | 10 | CTTTTTTTT | 9 | INS |
| Scaffold_9 | 1153508 | TTATATATATAT | 12 | TTATATATAT | 10 | INS |
| Scaffold_9 | 1176718 | CAAAAAAAAAAAA | 13 | CAAAAAAAAAAAAA | 14 | DEL |
| Scaffold_9 | 1292094 | GAAAAAAAAA | 10 | GAAAAAAAAAA | 11 | DEL |
| Scaffold_9 | 1564796 | CTTTTTTTTT | 10 | CTTTTTTTT | 9 | INS |
| Scaffold_9 | 1592380 | CTTTTTTTTTT | 11 | CTTTTTTTTTTT | 12 | DEL |
| Scaffold_9 | 1903312 | TTATATATATAT | 12 | TTATATATAT | 10 | INS |
| Scaffold_9 | 1939311 | TAAAAAAAAAAAA | 13 | TAAAAAAAAAAAAA | 14 | DEL |
| Scaffold_9 | 2047334 | CAAAAAAAAA | 10 | CAAAAAAAAAA,CAAAAAAAA | 21 | DEL |
| Scaffold_9 | 2084385 | CTTTTTTTTTT | 11 | CTTTTTTTTTTT | 12 | DEL |
| Scaffold_90 | 149282 | GTTTTTTTTT | 10 | GTTTTTTTTTT | 11 | DEL |
| Scaffold_901 | 54749 | GAAAAAAAAAA | 11 | GAAAAAAAAAAA | 12 | DEL |
| Scaffold_902 | 2106 | TAAAAAAAAA | 10 | TAAAAAAAAAAA | 12 | DEL |
| Scaffold_92 | 307924 | CTTTTTTTTTT | 11 | CTTTTTTTTT | 10 | INS |
| Scaffold_93 | 63891 | GTTTTTTTTTT | 11 | GTTTTTTTTT | 10 | INS |
| Scaffold_933 | 22826 | CAAAAAAAAAAAAA | 14 | CAAAAAAAAAAAAAA | 15 | DEL |
| Scaffold_936 | 40823 | CAAAAAAAAA | 10 | CAAAAAAAAAA | 11 | DEL |
| Scaffold_94 | 104682 | CTTTTTTTTTT | 11 | CTTTTTTTTTTT,CTTTTTTTTTTTT,CTTTTTTTTT | 37 | DEL |