| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_1503 | 45742 | A | T | 21 | 40.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_1507 | 30415 | T | G | 16 | 46.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_1507 | 30417 | A | T | 15 | 55.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_1514 | 27566 | C | A | 10 | 30.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_1514 | 27567 | C | G | 10 | 30.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_1539 | 5675 | C | A | 21 | 46.77 | CDS | Transversion | 0/1 | Protease Do-like 1, chloroplastic (EC 3.4.21.-) (Protein DEGRADATION OF PERIPLASMIC PROTEINS 1) (DEGP PROTEASE 1) |
| Scaffold_1597 | 31409 | A | C | 11 | 52.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_1615 | 44592 | A | T | 120 | 772.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_1644 | 15656 | A | T | 39 | 47.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_1675 | 13833 | C | G | 18 | 89.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_1675 | 13834 | T | A | 18 | 80.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_1684 | 5267 | C | A | 15 | 55.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_1693 | 43127 | C | A | 16 | 52.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1698 | 40609 | A | T | 104 | 65.77 | CDS | Transversion | 0/1 | 40S ribosomal protein S4 |
| Scaffold_1735 | 2347 | T | A | 21 | 43.77 | noncoding | Transversion | 0/1 | Catalase (EC 1.11.1.6) |
| Scaffold_1772 | 29842 | G | C | 10 | 33.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_1779 | 4469 | A | C | 13 | 42.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1788 | 7011 | A | C | 23 | 31.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1788 | 7257 | C | A | 22 | 711.78 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_1788 | 7258 | A | C | 21 | 666.8 | noncoding | Transversion | 1/1 | Unannotated |