| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_1790 | 24653 | C | G | 30 | 1044.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_1790 | 26941 | T | A | 21 | 118.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_1790 | 26942 | A | T | 21 | 99.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_1791 | 27418 | T | G | 15 | 296.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_1791 | 27434 | C | A | 15 | 64.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_1795 | 37744 | T | G | 10 | 243.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1798 | 18677 | A | T | 16 | 78.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_1821 | 28815 | T | G | 13 | 46.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_1827 | 7013 | T | G | 12 | 132.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_1840 | 38599 | G | T | 249 | 76.77 | exon | Transversion | 0/1 | Chlorophyll a-b binding protein CP29.2, chloroplastic (LHCB4.2) (LHCII protein 4.2) |
| Scaffold_1900 | 18017 | G | T | 184 | 5588.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_1902 | 2226 | A | C | 12 | 52.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_1910 | 783 | G | C | 15 | 314.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_1928 | 11932 | T | G | 10 | 76.81 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1934 | 39734 | A | C | 12 | 254.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_1934 | 39735 | A | C | 17 | 420.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_1943 | 6472 | G | T | 23 | 568.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_1959 | 6229 | A | T | 47 | 492.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1975 | 35082 | C | A | 127 | 3113.77 | exon | Transversion | 1/1 | Outer envelope protein 64, mitochondrial (Mitochondrial outer membrane protein 64) (mtOM64) (Translocon at the outer membrane of chloroplasts 64-V) (AtTOC64-V) |
| Scaffold_2005 | 14119 | T | A | 20 | 43.77 | noncoding | Transversion | 0/1 | Unannotated |