| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2430 | 51419 | T | G | 15 | 49.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2431 | 5218 | C | G | 124 | 261.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2435 | 79928 | C | G | 26 | 34.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2435 | 79929 | T | A | 26 | 34.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2437 | 48756 | C | A | 22 | 43.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2437 | 48857 | T | G | 14 | 55.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2437 | 78603 | A | C | 11 | 67.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2438 | 1872 | A | C | 250 | 1948.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2438 | 2670 | G | T | 18 | 49.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2438 | 49453 | C | G | 12 | 175.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2438 | 50063 | G | T | 18 | 34.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2438 | 79722 | T | G | 23 | 37.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2438 | 80312 | C | A | 18 | 30.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2438 | 105017 | G | C | 250 | 80.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2441 | 26588 | C | G | 16 | 40.77 | exon | Transversion | 0/1 | Uncharacterized protein At1g21580 |
| Scaffold_2444 | 14661 | T | G | 12 | 58.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2445 | 10106 | T | G | 10 | 135.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2446 | 103956 | G | T | 15 | 55.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2448 | 112409 | G | T | 12 | 39.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2451 | 21015 | A | T | 11 | 147.77 | intron | Transversion | 0/1 | Unannotated |