| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2475 | 122076 | T | A | 250 | 7000.77 | CDS | Transversion | 0/1 | Elongation factor 1-alpha (EF-1-alpha) |
| Scaffold_2476 | 126397 | A | T | 13 | 58.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2477 | 7992 | G | C | 12 | 39.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2479 | 100881 | C | A | 97 | 636.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2481 | 90006 | C | A | 13 | 175.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2484 | 2116 | A | C | 10 | 33.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2486 | 52335 | G | T | 20 | 585.77 | intron | Transversion | 0/1 | Mitogen-activated protein kinase 3 (AtMPK3) (MAP kinase 3) (EC 2.7.11.24) |
| Scaffold_2486 | 81556 | G | C | 45 | 57.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2486 | 81557 | A | T | 46 | 57.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2488 | 25209 | G | T | 56 | 45.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2488 | 72375 | A | T | 48 | 72.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2491 | 22406 | G | T | 26 | 234.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2492 | 51179 | A | T | 32 | 47.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2492 | 121343 | T | A | 10 | 58.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2494 | 100134 | C | G | 10 | 36.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2495 | 103712 | G | C | 28 | 80.77 | exon | Transversion | 0/1 | U-box domain-containing protein 30 (EC 2.3.2.27) (Plant U-box protein 30) (RING-type E3 ubiquitin transferase PUB30) |
| Scaffold_2495 | 104062 | T | G | 41 | 266.77 | exon | Transversion | 0/1 | U-box domain-containing protein 30 (EC 2.3.2.27) (Plant U-box protein 30) (RING-type E3 ubiquitin transferase PUB30) |
| Scaffold_2495 | 104347 | A | C | 21 | 48.77 | exon | Transversion | 0/1 | U-box domain-containing protein 30 (EC 2.3.2.27) (Plant U-box protein 30) (RING-type E3 ubiquitin transferase PUB30) |
| Scaffold_2498 | 57345 | A | C | 10 | 30.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2500 | 102735 | A | T | 19 | 43.77 | CDS | Transversion | 0/1 | Unannotated |