| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_12 | 358446 | T | A | 21 | 86.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 359231 | T | G | 141 | 1034.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 359248 | G | T | 148 | 1104.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 359361 | C | A | 32 | 53.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 359523 | C | A | 40 | 51.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 497336 | T | G | 18 | 37.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 788453 | G | T | 248 | 550.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 874769 | T | A | 12 | 86.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 944770 | T | A | 11 | 83.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 1044825 | T | A | 95 | 269.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 1092020 | T | A | 10 | 30.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 1284076 | G | T | 26 | 46.77 | CDS | Transversion | 0/1 | 3-oxo-Delta(4,5)-steroid 5-beta-reductase (EC 1.3.1.3) (Delta(4)-3-oxosteroid 5-beta-reductase) (Delta-4,5-steroid 5-beta-reductase) (At5beta-StR) (Progesterone 5-beta-reductase) (5beta-POR) (Protein VEIN PATTERNING 1) |
| Scaffold_12 | 2102958 | T | A | 11 | 316.22 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 2102959 | G | C | 10 | 290.18 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 2402501 | A | C | 10 | 30.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 2481318 | T | A | 15 | 49.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 2481320 | A | C | 18 | 40.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 2628563 | C | A | 79 | 766.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 2628605 | A | C | 59 | 396.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 2628635 | A | T | 44 | 371.77 | CDS | Transversion | 0/1 | Unannotated |