| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2577 | 102650 | A | T | 10 | 58.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2581 | 3240 | T | G | 23 | 157.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2581 | 89471 | G | T | 13 | 58.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2583 | 8599 | A | C | 89 | 91.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2585 | 72194 | T | G | 22 | 34.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2585 | 81366 | A | T | 19 | 43.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2586 | 18201 | A | C | 10 | 177.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2588 | 28389 | A | C | 13 | 239.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2588 | 61419 | T | G | 21 | 40.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2588 | 61462 | A | C | 24 | 71.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2589 | 83092 | T | A | 23 | 672.78 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_2589 | 88305 | A | C | 18 | 46.77 | intron | Transversion | 0/1 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_2589 | 88306 | A | T | 18 | 49.77 | intron | Transversion | 0/1 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_2590 | 53840 | C | A | 14 | 33.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2590 | 92113 | A | C | 19 | 52.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2598 | 54843 | G | C | 29 | 34.77 | CDS | Transversion | 0/1 | B3 domain-containing protein REM19 (Protein RELATED TO VERNALIZATION 1) (Protein REPRODUCTIVE MERISTEM 19) |
| Scaffold_2598 | 54983 | T | G | 16 | 46.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2605 | 57874 | A | T | 11 | 104.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2613 | 60173 | G | T | 12 | 42.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2616 | 51170 | T | G | 18 | 157.77 | noncoding | Transversion | 0/1 | Unannotated |