| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2627 | 57800 | G | C | 41 | 1268.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_2632 | 44476 | C | G | 38 | 454.03 | CDS | Transversion | 1/1 | Transmembrane 9 superfamily member 10 (Endomembrane protein 3) (Transmembrane nine protein 10) (AtTMN10) |
| Scaffold_2632 | 86710 | G | C | 15 | 162.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2635 | 853 | T | G | 14 | 92.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2641 | 38621 | C | A | 10 | 67.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2645 | 90769 | T | A | 32 | 62.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2646 | 2781 | C | G | 12 | 39.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2646 | 55000 | T | A | 109 | 3142.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_2648 | 7734 | C | A | 14 | 30.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2652 | 41779 | T | A | 19 | 31.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2652 | 55536 | C | A | 17 | 43.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2652 | 55537 | T | G | 11 | 104.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2654 | 34357 | T | A | 10 | 260.18 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2659 | 712 | T | A | 11 | 30.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2667 | 59435 | T | A | 17 | 89.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2669 | 39386 | A | T | 72 | 2164.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2669 | 62803 | T | A | 11 | 30.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2677 | 138624 | G | T | 16 | 43.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2678 | 22031 | A | C | 14 | 43.77 | exon | Transversion | 0/1 | Superoxide dismutase [Mn], mitochondrial (EC 1.15.1.1) |
| Scaffold_2678 | 167720 | G | T | 37 | 81.77 | CDS | Transversion | 0/1 | Unannotated |