| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2692 | 136043 | T | A | 14 | 89.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2692 | 167485 | G | T | 10 | 67.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2693 | 37554 | T | G | 33 | 249.77 | CDS | Transversion | 0/1 | Endoglucanase 6 (EC 3.2.1.4) (Endo-1,4-beta glucanase 6) |
| Scaffold_2693 | 38629 | A | C | 16 | 55.77 | CDS | Transversion | 0/1 | Endoglucanase 6 (EC 3.2.1.4) (Endo-1,4-beta glucanase 6) |
| Scaffold_2693 | 38630 | A | T | 16 | 55.77 | CDS | Transversion | 0/1 | Endoglucanase 6 (EC 3.2.1.4) (Endo-1,4-beta glucanase 6) |
| Scaffold_2693 | 99817 | C | G | 32 | 33.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2694 | 135396 | A | T | 32 | 30.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2695 | 158331 | A | T | 148 | 311.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2695 | 158431 | T | G | 112 | 192.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2695 | 243152 | A | C | 14 | 40.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2696 | 20872 | A | C | 10 | 192.77 | CDS | Transversion | 0/1 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_2696 | 50775 | T | G | 14 | 33.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2696 | 52961 | G | T | 35 | 53.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2697 | 26675 | G | C | 20 | 40.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2698 | 45587 | A | C | 20 | 247.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2698 | 52621 | G | T | 21 | 59.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2698 | 61391 | A | C | 56 | 153.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2698 | 61393 | G | T | 80 | 130.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2698 | 99253 | C | G | 240 | 5697.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2698 | 139519 | T | A | 11 | 98.77 | CDS | Transversion | 0/1 | Unannotated |