| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2698 | 189639 | A | C | 122 | 206.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2699 | 221665 | T | A | 10 | 169.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2704 | 35698 | G | T | 17 | 353.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2704 | 35852 | C | G | 20 | 80.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2706 | 546 | A | C | 63 | 863.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2706 | 1982 | T | A | 22 | 85.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2707 | 42446 | T | A | 19 | 362.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2716 | 45402 | C | A | 31 | 84.77 | noncoding | Transversion | 0/1 | NAD(P)H-quinone oxidoreductase subunit I, chloroplastic (EC 7.1.1.-) (NAD(P)H dehydrogenase subunit I) (NDH subunit I) (NADH-plastoquinone oxidoreductase subunit I) |
| Scaffold_2726 | 42685 | A | T | 48 | 60.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2726 | 44929 | C | G | 250 | 2987.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2730 | 23793 | G | T | 17 | 30.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2733 | 31614 | G | T | 17 | 43.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2733 | 32357 | A | C | 22 | 133.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2734 | 2152 | C | G | 12 | 126.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2734 | 3094 | T | G | 34 | 133.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2734 | 46732 | G | T | 13 | 129.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2734 | 59342 | T | G | 12 | 277.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2734 | 59344 | A | C | 13 | 266.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2737 | 2042 | G | C | 37 | 448.77 | CDS | Transversion | 0/1 | GPN-loop GTPase QQT2 (EC 3.6.5.-) (Protein QUATRE QUART 2) |
| Scaffold_2737 | 43465 | C | A | 40 | 330.77 | exon | Transversion | 0/1 | Unannotated |