| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2787 | 3821 | C | A | 207 | 127.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2787 | 3898 | C | A | 100 | 332.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2790 | 24228 | A | C | 249 | 145.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2790 | 24356 | C | A | 250 | 207.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2790 | 24420 | A | C | 249 | 1468.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2790 | 24447 | A | C | 250 | 633.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2790 | 24448 | A | C | 249 | 757.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2790 | 24546 | A | C | 250 | 487.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2790 | 24647 | T | G | 250 | 325.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2790 | 24734 | T | G | 249 | 41.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2790 | 25248 | T | G | 249 | 36.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2790 | 25275 | A | C | 246 | 266.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2790 | 25300 | A | C | 250 | 307.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2790 | 25385 | T | G | 247 | 424.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2790 | 25471 | A | C | 249 | 89.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2790 | 25764 | A | C | 250 | 189.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2790 | 25900 | A | C | 247 | 1103.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2790 | 25931 | A | C | 249 | 915.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2791 | 43080 | G | T | 250 | 8928.77 | noncoding | Transversion | 1/1 | Photosystem II D2 protein (PSII D2 protein) (EC 1.10.3.9) (Photosystem Q(A) protein) |
| Scaffold_2795 | 17898 | C | A | 17 | 464.77 | noncoding | Transversion | 1/1 | Unannotated |