| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2796 | 2349 | C | A | 33 | 60.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2797 | 30667 | T | A | 75 | 558.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2801 | 1624 | T | A | 10 | 35.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2801 | 2501 | A | T | 21 | 523.96 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_2805 | 25269 | A | T | 250 | 1033.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2808 | 39515 | T | A | 53 | 1479.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2809 | 6234 | T | G | 14 | 118.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2811 | 8371 | A | C | 12 | 81.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2811 | 8954 | A | C | 11 | 64.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2811 | 9046 | T | A | 36 | 737.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2811 | 9460 | T | G | 40 | 425.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2811 | 9628 | A | T | 65 | 354.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2812 | 58876 | T | A | 61 | 1810.77 | exon | Transversion | 1/1 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_2812 | 58896 | G | T | 62 | 1771.77 | exon | Transversion | 1/1 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_2812 | 59149 | T | A | 31 | 791.1 | exon | Transversion | 0/1 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_2812 | 77105 | C | G | 16 | 437.1 | intron | Transversion | 1/1 | 50S ribosomal protein L2-B, chloroplastic |
| Scaffold_2815 | 5495 | G | T | 61 | 1161.77 | intron | Transversion | 0/1 | Probable inactive dual specificity protein phosphatase-like At4g18593 |
| Scaffold_2815 | 5523 | T | G | 25 | 486.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2817 | 11325 | T | G | 15 | 34.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2817 | 11326 | C | A | 15 | 43.77 | noncoding | Transversion | 0/1 | Unannotated |