| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_12 | 2628936 | T | A | 17 | 186.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 2628981 | A | T | 220 | 2818.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 2629077 | C | A | 193 | 1207.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 2632623 | T | A | 250 | 1802.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 2633146 | C | G | 250 | 3827.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 2633247 | T | G | 54 | 503.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 2633302 | T | A | 59 | 638.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 2633326 | A | C | 67 | 1114.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 2781754 | T | A | 11 | 30.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 3228370 | T | A | 18 | 157.77 | CDS | Transversion | 0/1 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_12 | 3292562 | C | G | 71 | 1710.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 3292563 | T | G | 67 | 30.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 3436812 | C | A | 14 | 33.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 3820474 | A | C | 16 | 37.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 3838668 | A | T | 12 | 52.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 4179020 | T | G | 16 | 48.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 4208838 | C | G | 13 | 55.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_13 | 23130 | A | T | 14 | 55.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_13 | 77534 | G | T | 29 | 37.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_13 | 173885 | G | C | 16 | 80.77 | CDS | Transversion | 0/1 | Alanine--tRNA ligase (EC 6.1.1.7) (Alanyl-tRNA synthetase) (AlaRS) |