| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2901 | 2336 | G | T | 189 | 604.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2901 | 2338 | G | T | 158 | 221.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2905 | 45335 | T | A | 250 | 122.77 | noncoding | Transversion | 0/1 | Photosystem II reaction center protein M (PSII-M) |
| Scaffold_2906 | 3946 | T | A | 178 | 6321.77 | exon | Transversion | 1/1 | Catalase (EC 1.11.1.6) |
| Scaffold_2908 | 41126 | C | A | 10 | 61.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2908 | 47329 | G | C | 58 | 1526.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_2915 | 14807 | C | A | 26 | 70.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2916 | 13984 | C | A | 17 | 58.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2917 | 8207 | T | G | 20 | 43.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2917 | 48470 | T | G | 43 | 1241.77 | noncoding | Transversion | 1/1 | Photosystem II CP47 reaction center protein (PSII 47 kDa protein) (Protein CP-47) |
| Scaffold_2922 | 47460 | T | A | 18 | 52.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2924 | 57910 | A | C | 26 | 127.77 | noncoding | Transversion | 0/1 | Photosystem I P700 chlorophyll a apoprotein A1 (EC 1.97.1.12) (PSI-A) (PsaA) |
| Scaffold_2924 | 57911 | G | T | 31 | 657.77 | noncoding | Transversion | 0/1 | Photosystem I P700 chlorophyll a apoprotein A1 (EC 1.97.1.12) (PSI-A) (PsaA) |
| Scaffold_2924 | 57912 | A | C | 35 | 672.77 | noncoding | Transversion | 0/1 | Photosystem I P700 chlorophyll a apoprotein A1 (EC 1.97.1.12) (PSI-A) (PsaA) |
| Scaffold_2924 | 57914 | G | C | 62 | 229.77 | noncoding | Transversion | 0/1 | Photosystem I P700 chlorophyll a apoprotein A1 (EC 1.97.1.12) (PSI-A) (PsaA) |
| Scaffold_2930 | 37072 | C | A | 12 | 30.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2930 | 37637 | T | A | 29 | 59.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2932 | 15016 | A | C | 28 | 154.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2932 | 15017 | G | T | 63 | 189.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2932 | 15039 | T | A | 250 | 53.77 | CDS | Transversion | 0/1 | Unannotated |