| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3039 | 54068 | C | A | 25 | 125.77 | CDS | Transversion | 0/1 | Heat shock 70 kDa protein 17 (Heat shock protein 70-17) (AtHsp70-17) |
| Scaffold_3039 | 54925 | C | A | 112 | 30.77 | intron | Transversion | 0/1 | Heat shock 70 kDa protein 17 (Heat shock protein 70-17) (AtHsp70-17) |
| Scaffold_3039 | 55509 | C | G | 40 | 406.77 | CDS | Transversion | 0/1 | Heat shock 70 kDa protein 17 (Heat shock protein 70-17) (AtHsp70-17) |
| Scaffold_3040 | 25827 | T | G | 140 | 2071.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3040 | 26744 | T | A | 32 | 758.81 | CDS | Transversion | 0/1 | Exportin-2 (Exp2) (Cellular apoptosis susceptibility protein homolog) (Importin-alpha re-exporter) |
| Scaffold_3040 | 26762 | C | G | 39 | 992.89 | CDS | Transversion | 0/1 | Exportin-2 (Exp2) (Cellular apoptosis susceptibility protein homolog) (Importin-alpha re-exporter) |
| Scaffold_3040 | 26831 | A | T | 45 | 55.77 | CDS | Transversion | 0/1 | Exportin-2 (Exp2) (Cellular apoptosis susceptibility protein homolog) (Importin-alpha re-exporter) |
| Scaffold_3040 | 27633 | T | A | 11 | 265.84 | CDS | Transversion | 0/1 | Exportin-2 (Exp2) (Cellular apoptosis susceptibility protein homolog) (Importin-alpha re-exporter) |
| Scaffold_3040 | 78916 | T | G | 17 | 92.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3046 | 1318 | T | A | 13 | 250.9 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3046 | 1777 | G | T | 27 | 855.77 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_3047 | 12292 | T | A | 32 | 309.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3047 | 12327 | A | C | 243 | 7777.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_3047 | 12332 | T | G | 250 | 7709.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_3047 | 12471 | G | T | 16 | 382.74 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3047 | 12505 | A | C | 37 | 139.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3047 | 12561 | G | C | 44 | 142.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3051 | 5317 | A | C | 250 | 30.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3051 | 5344 | T | G | 250 | 42.96 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3051 | 5345 | A | T | 250 | 33.77 | noncoding | Transversion | 0/1 | Unannotated |