| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3061 | 33628 | A | C | 250 | 510.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3061 | 33699 | A | C | 250 | 386.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3062 | 23332 | C | G | 23 | 537.84 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3062 | 23333 | T | A | 103 | 3071.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3064 | 55220 | C | G | 247 | 1654.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3064 | 55292 | A | T | 152 | 5512.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_3065 | 46958 | A | T | 248 | 1325.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3065 | 46959 | G | C | 243 | 2069.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3068 | 32011 | G | C | 74 | 42.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3068 | 32012 | G | T | 77 | 46.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3068 | 54069 | A | C | 250 | 9133.77 | noncoding | Transversion | 1/1 | Photosystem II protein D1 (PSII D1 protein) (EC 1.10.3.9) (Photosystem II Q(B) protein) |
| Scaffold_3068 | 54073 | T | A | 248 | 293.77 | noncoding | Transversion | 0/1 | Photosystem II protein D1 (PSII D1 protein) (EC 1.10.3.9) (Photosystem II Q(B) protein) |
| Scaffold_3081 | 16234 | C | G | 41 | 614.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3081 | 16236 | G | T | 250 | 8448.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_3081 | 16242 | A | C | 250 | 1441.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3081 | 16257 | T | G | 249 | 1385.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3082 | 15204 | G | C | 13 | 266.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3084 | 47569 | C | A | 21 | 710.79 | noncoding | Transversion | 1/1 | Glutathione S-transferase U18 (AtGSTU18) (EC 2.5.1.18) (GST class-tau member 18) (Glutathione S-transferase 29) |
| Scaffold_3084 | 47570 | A | T | 111 | 157.77 | noncoding | Transversion | 0/1 | Glutathione S-transferase U18 (AtGSTU18) (EC 2.5.1.18) (GST class-tau member 18) (Glutathione S-transferase 29) |
| Scaffold_3088 | 24 | A | C | 11 | 58.77 | intron | Transversion | 0/1 | Unannotated |