| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3088 | 44 | G | T | 14 | 57.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3088 | 47645 | A | T | 250 | 180.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3090 | 26059 | G | T | 250 | 8660.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3099 | 18102 | T | G | 24 | 414.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3100 | 42854 | G | C | 14 | 61.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3102 | 44652 | C | A | 250 | 243.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3105 | 5794 | T | A | 18 | 40.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3106 | 23763 | G | C | 37 | 155.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3106 | 23764 | G | T | 43 | 1151.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3106 | 23765 | T | A | 61 | 1726.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3108 | 21242 | T | A | 98 | 2919.77 | exon | Transversion | 1/1 | Ribonuclease TUDOR 1 (AtTudor1) (TUDOR-SN protein 1) (EC 3.1.-.-) |
| Scaffold_3108 | 21311 | G | C | 248 | 2719.77 | exon | Transversion | 0/1 | Ribonuclease TUDOR 1 (AtTudor1) (TUDOR-SN protein 1) (EC 3.1.-.-) |
| Scaffold_3108 | 21422 | C | A | 117 | 989.77 | exon | Transversion | 0/1 | Ribonuclease TUDOR 1 (AtTudor1) (TUDOR-SN protein 1) (EC 3.1.-.-) |
| Scaffold_3112 | 20756 | A | T | 249 | 219.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3112 | 20863 | C | A | 250 | 1241.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3113 | 50184 | T | G | 21 | 242.8 | noncoding | Transversion | 1/1 | Protein PsbN |
| Scaffold_3115 | 11433 | T | A | 26 | 292.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3115 | 11464 | C | G | 28 | 84.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3115 | 11517 | A | T | 29 | 696.78 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3117 | 28411 | T | G | 197 | 32.77 | CDS | Transversion | 0/1 | Unannotated |