| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3118 | 54586 | G | C | 25 | 179.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3118 | 54633 | T | A | 250 | 121.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3118 | 54654 | A | C | 250 | 1229.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3118 | 54825 | G | T | 249 | 47.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3122 | 47939 | T | G | 14 | 36.78 | noncoding | Transversion | 0/1 | Photosystem II D2 protein (PSII D2 protein) (EC 1.10.3.9) (Photosystem Q(A) protein) |
| Scaffold_3126 | 10032 | G | T | 229 | 8697.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3128 | 90 | T | G | 12 | 118.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3128 | 293 | T | A | 245 | 1618.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3128 | 314 | C | G | 250 | 6437.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3128 | 371 | C | A | 250 | 6740.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3128 | 780 | C | G | 22 | 445.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3130 | 5221 | C | G | 10 | 61.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3130 | 20489 | T | A | 14 | 81.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3135 | 14989 | T | G | 88 | 49.74 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3135 | 34283 | G | T | 91 | 3441.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3136 | 43185 | A | C | 250 | 613.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3136 | 43460 | A | C | 38 | 747.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3136 | 43484 | C | A | 154 | 2769.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3136 | 43548 | T | G | 236 | 1057.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3136 | 44009 | T | A | 35 | 133.77 | CDS | Transversion | 0/1 | Unannotated |