| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3230 | 40419 | A | C | 248 | 810.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3230 | 40420 | G | T | 250 | 440.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3233 | 37059 | C | A | 54 | 135.78 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3234 | 19949 | T | A | 15 | 52.77 | exon | Transversion | 0/1 | Probable methyltransferase PMT16 (EC 2.1.1.-) |
| Scaffold_3234 | 19950 | T | G | 15 | 55.77 | exon | Transversion | 0/1 | Probable methyltransferase PMT16 (EC 2.1.1.-) |
| Scaffold_3236 | 33886 | A | C | 16 | 246.77 | exon | Transversion | 0/1 | Cellulose synthase-like protein D3 (AtCslD3) (EC 2.4.1.-) (Protein KOJAK) |
| Scaffold_3236 | 33909 | C | G | 28 | 63.77 | exon | Transversion | 0/1 | Cellulose synthase-like protein D3 (AtCslD3) (EC 2.4.1.-) (Protein KOJAK) |
| Scaffold_3236 | 34991 | T | G | 14 | 311.77 | CDS | Transversion | 0/1 | Cellulose synthase-like protein D3 (AtCslD3) (EC 2.4.1.-) (Protein KOJAK) |
| Scaffold_3243 | 22145 | T | G | 11 | 61.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3243 | 22273 | C | G | 14 | 67.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3243 | 22366 | G | C | 15 | 304.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3243 | 50586 | A | C | 249 | 408.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3243 | 50661 | T | G | 250 | 73.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3244 | 18179 | T | G | 250 | 1025.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3244 | 18206 | A | C | 250 | 92.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3244 | 18223 | A | T | 249 | 481.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3244 | 18234 | A | C | 250 | 560.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3245 | 33306 | A | C | 250 | 364.77 | noncoding | Transversion | 0/1 | Photosystem II protein D1 (PSII D1 protein) (EC 1.10.3.9) (Photosystem II Q(B) protein) |
| Scaffold_3245 | 33307 | A | T | 247 | 495.77 | noncoding | Transversion | 0/1 | Photosystem II protein D1 (PSII D1 protein) (EC 1.10.3.9) (Photosystem II Q(B) protein) |
| Scaffold_3251 | 483 | A | T | 12 | 183.77 | noncoding | Transversion | 0/1 | Unannotated |